Feline Health / Genetics

Cat Disease and Genetic Variant Glossary

Evidence-reviewed explanations linked directly from the Cat Breed Disease Predispositions reference.

How to use this glossary

A breed association is not a diagnosis. “Congenital” does not automatically mean inherited. A DNA result applies to the exact variant tested and should not be generalized to every breed, lineage or clinically similar disorder.

Risk variants—particularly feline HCM markers—do not replace echocardiography. Pigmentation variants do not replace BAER hearing testing, and renal-cyst variants do not replace imaging.

Genetic-test interpretation

Autosomal recessive
One disease-associated copy usually indicates a carrier; two copies identify an at-risk genotype for the validated variant.
Autosomal dominant
One disease-associated copy may confer a phenotype or risk, but penetrance and severity can vary.
X-linked recessive
Hemizygous males are usually at greatest risk; heterozygous females are usually carriers but can vary.
Susceptibility marker
A positive result changes risk and is not equivalent to a clinical diagnosis.
Negative result
A negative result excludes only the tested variant; it does not exclude other variants or other causes of the same disease.

Alphabetical index

A B C D E F G H L M N P R S T

Reviewed entries

Acrodermatitis enteropathica — SLC39A4-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited zinc-transport disorder causing dermatologic and systemic disease.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Turkish Van

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Acute intermittent porphyria — HMBS-related

Evidence status: Variant-specific inherited disorder; inheritance must be taken from the exact HMBS assay

What it is and how it can affect the cat
Inherited heme-biosynthesis disorder that can produce reddish-brown urine and variable neurologic or systemic signs.
How it occurs or is acquired
HMBS-associated disease is documented in Siamese/Oriental-related cats.
Inheritance and risk
Feline HMBS variants have not all been assigned the same inheritance model. Do not apply a general “dominant” or “recessive” label without confirming the exact tested variant. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive result establishes that the named HMBS variant was detected; zygosity, the assay’s validated inheritance model, penetrance, and compatible biochemical/clinical findings determine meaning.

Relevant breeds/varieties on this page: Oriental Longhair, Oriental Shorthair, Peterbald, Siamese

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Alpha-mannosidosis — MAN2B1-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Lysosomal storage disease causing neurologic and skeletal abnormalities.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Exotic Shorthair, Himalayan, Persian, Scottish Fold, Scottish Fold Longhair, Selkirk Rex, Selkirk Rex Longhair

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

ALX1-related craniofacial defect (Burmese head defect spectrum)

Evidence status: Established ALX1-associated developmental variant with genotype-dependent severity

What it is and how it can affect the cat
Severe craniofacial malformation described in Burmese-related populations; milder craniofacial effects may be present in heterozygous animals depending on the variant and genetic background.
How it occurs or is acquired
A causal ALX1-associated defect is established in affected lines. Current feline-genetics guidance groups several Burmese/Asian-derived breeds for monitoring.
Inheritance and risk
Autosomal incomplete-dominant/semidominant effect is reported in the Burmese head-defect spectrum: homozygotes can have severe craniofacial malformation, while heterozygotes may show a milder head-shape phenotype. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
One copy identifies a heterozygote that may express a milder craniofacial phenotype; two copies identify the severe at-risk genotype. Interpretation is specific to the validated Burmese-line variant.

Relevant breeds/varieties on this page: American Shorthair, Australian Mist, Bombay, Burmese, Burmilla, Burmilla Longhair, Singapura

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Autoimmune lymphoproliferative syndrome — FASLG-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited immune dysregulation characterized by abnormal lymphocyte survival and lymphoproliferation.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: British Longhair, British Shorthair

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Brachycephalic conformation-associated disease

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Shortened facial and skull conformation associated with respiratory obstruction, dental crowding/malocclusion, epiphora, ocular exposure, corneal disease and facial skin problems.
How it occurs or is acquired
The risk increases with the severity of brachycephaly; this is a selected conformational trait rather than a single validated disease variant.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: Exotic Shorthair, Himalayan, Persian

Primary reference for this entry: UFAW — Persian brachycephaly and associated health problems.

Cerebellar hypoplasia

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Underdevelopment of the cerebellum causing lifelong nonprogressive ataxia, intention tremor and hypermetria.
How it occurs or is acquired
Congenital but usually not a breed-specific inherited disease; prenatal viral injury, especially feline panleukopenia exposure, is an important cause.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: No specific TICA breed association is asserted on this page.

Primary reference for this entry: Merck Veterinary Manual — Congenital and inherited disorders of the nervous system in cats.

Chediak-Higashi syndrome — LYST-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Rare inherited disorder affecting lysosomal trafficking, pigmentation and hemostasis.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Exotic Shorthair, Himalayan, Persian, Scottish Fold, Scottish Fold Longhair, Selkirk Rex, Selkirk Rex Longhair

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Cleft lip and/or palate

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Failure of normal embryonic fusion of facial or palatal structures, producing an oral-nasal communication.
How it occurs or is acquired
Congenital; may be genetic, environmental or multifactorial. Merck notes that cleft palate is uncommon in cats but occurs more often in Siamese.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: Siamese

Primary reference for this entry: Merck Veterinary Manual — Congenital and inherited disorders of the digestive system in cats.

Congenital heart defects

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Includes ventricular/atrial septal defects, atrioventricular valve dysplasia, patent ductus arteriosus, aortic stenosis, tetralogy of Fallot and other structural defects present at birth.
How it occurs or is acquired
Congenital heart disease is uncommon in cats overall; inherited risk is established or suspected for some defects, but breed-specific causation is often not defined.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: No specific TICA breed association is asserted on this page.

Primary reference for this entry: Merck Veterinary Manual — Congenital and inherited disorders of the cardiovascular system of cats.

Congenital myasthenic syndrome — COLQ-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited neuromuscular-junction disorder causing weakness, fatigability and characteristic abnormal gait or posture.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Devon Rex, Selkirk Rex, Selkirk Rex Longhair, Sphynx

Primary reference for this entry: Governing Council of the Cat Fancy — Gene testing.

Congenital portosystemic vascular anomaly

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
An abnormal vessel permits portal blood to bypass the liver, causing poor growth, gastrointestinal signs, urinary abnormalities and hepatic encephalopathy.
How it occurs or is acquired
Congenital shunts occur in cats; Merck notes increased prevalence in Persian and Himalayan cats.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: Himalayan, Persian

Primary reference for this entry: Merck Veterinary Manual — Hepatic portal venous hypoperfusion / congenital portosystemic vascular anomalies.

Congenital sensorineural deafness associated with depigmentation

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Congenital unilateral or bilateral deafness associated particularly with dominant white/blue-eyed pigmentation phenotypes.
How it occurs or is acquired
Pigmentation-associated deafness has a genetic/developmental basis, but risk depends on the specific white/blue-eye allele and genetic background.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: Khaomanee, Turkish Angora

Primary reference for this entry: Merck Veterinary Manual — Commonly reported congenital and inherited defects in cats.

Cystinuria — SLC7A9-related

Evidence status: Established SLC7A9-associated disease, but variant and inheritance are heterogeneous

What it is and how it can affect the cat
Inherited renal amino-acid transport defect that can predispose to cystine crystalluria and urolith formation.
How it occurs or is acquired
Pathogenic SLC7A9 variants are documented in cats and are included in breed-monitoring guidance for several breeds.
Inheritance and risk
Feline cystinuria is genetically heterogeneous. SLC7A9-associated forms can differ in dominance, recessivity and penetrance; the gene name alone does not define inheritance. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
Interpret the exact SLC7A9 variant and zygosity using the laboratory’s validated model. A positive genotype indicates altered cystine-transport risk, not that obstructive cystine stones are currently present.

Relevant breeds/varieties on this page: Devon Rex, Maine Coon, Maine Coon Polydactyl, Oriental Longhair, Oriental Shorthair, Peterbald, Selkirk Rex, Selkirk Rex Longhair, Siamese, Sphynx

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Diabetes mellitus — breed-associated risk

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Persistent hyperglycemia caused by inadequate insulin action and/or secretion.
How it occurs or is acquired
Epidemiologic studies have reported increased risk in Burmese, Norwegian Forest and Tonkinese cats; obesity, age, sex and environment remain important modifiers.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: Burmese, Norwegian Forest, Tonkinese

Primary reference for this entry: O'Neill et al. Epidemiology of diabetes mellitus in cats attending primary-care practices in England.

Dystrophin-associated muscular dystrophy

Evidence status: Established X-linked inherited disorder with a cited molecular association

What it is and how it can affect the cat
X-linked muscular dystrophy causing progressive muscle weakness and muscle enlargement/degeneration.
How it occurs or is acquired
This is a germline X-chromosome disorder inherited rather than acquired.
Inheritance and risk
X-linked recessive for the cited form; hemizygous males are at greatest risk, while heterozygous females are usually carriers but can vary. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive result must be interpreted by sex and zygosity. A male with the disease-associated allele is at risk; a heterozygous female is generally a carrier. Correlate with clinical findings.

Relevant breeds/varieties on this page: Maine Coon, Maine Coon Polydactyl

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Ehlers-Danlos / cutaneous asthenia — COL5A1-related

Evidence status: COL5A1-associated connective-tissue disease; variant and lineage validation required

What it is and how it can affect the cat
Connective-tissue disorder that can produce abnormally fragile, hyperextensible skin and impaired wound integrity.
How it occurs or is acquired
Pathogenic COL5A1 variants have been documented in cats, including breed-associated forms.
Inheritance and risk
Validated COL5A1-associated classical Ehlers-Danlos forms are generally autosomal dominant, but feline cutaneous asthenia is genetically heterogeneous. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive result is meaningful only for the exact COL5A1 variant and lineage validated by the laboratory. It should be correlated with skin fragility, hyperextensibility, scarring and family history.

Relevant breeds/varieties on this page: Australian Mist, Bengal, Bengal Longhair, Bombay, Burmese, Burmilla, Burmilla Longhair, Singapura

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Factor XI deficiency — F11-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited coagulation abnormality that may be clinically silent until surgery, trauma or another hemostatic challenge.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Maine Coon, Maine Coon Polydactyl

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Familial AA amyloidosis

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Systemic AA amyloid deposition. In Abyssinian/Somali cats renal disease is prominent; in Siamese/Oriental lines hepatic deposition and liver rupture are important clinical concerns.
How it occurs or is acquired
Familial/breed-associated disease is well recognized, but the full causal architecture is not defined as a single universally predictive DNA test.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: Abyssinian, Oriental Longhair, Oriental Shorthair, Siamese, Somali

Primary reference for this entry: Single nucleotide polymorphisms associated with AA-amyloidosis in Siamese and Oriental Shorthair cats.

FOXN1-related hypotrichosis with immune dysfunction

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Congenital hair deficiency associated with impaired thymic/immune development and reduced survival.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Birman

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

GDF7-related holoprosencephaly

Evidence status: Published Toyger-line GDF7 association; general predictive testing remains limited

What it is and how it can affect the cat
Severe developmental forebrain and craniofacial malformation.
How it occurs or is acquired
A breed-associated GDF7 variant is documented in Toyger cats.
Inheritance and risk
A heritable GDF7 deletion has been reported in an affected Toyger family, but the evidence does not justify extending a simple inheritance or penetrance estimate to all Toygers. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
Detection may support risk in the validated family line. A negative result cannot exclude other genetic or developmental causes of forebrain malformation.

Relevant breeds/varieties on this page: Toyger

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Glycogen storage disease IV — GBE1-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited glycogen branching-enzyme deficiency that can cause fetal loss, neonatal death or progressive neuromuscular disease.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Norwegian Forest

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

GM1 gangliosidosis — GLB1-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Lysosomal storage disorder causing progressive neurologic disease.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Korat, Oriental Longhair, Oriental Shorthair, Peterbald, Siamese

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

GM2 gangliosidosis — HEXB-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Lysosomal storage disease causing progressive neurologic dysfunction.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Australian Mist, Bombay, Burmese, Burmilla, Burmilla Longhair, Korat, Singapura

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

HPS5-related pigmentation disorder ('pink-eye' phenotype)

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited pigmentation abnormality reported in Donskoy cats.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Donskoy

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Hypertrophic cardiomyopathy (HCM)

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Primary myocardial disease characterized by left-ventricular hypertrophy not explained by another systemic cause. Cats may remain subclinical or develop heart failure, arterial thromboembolism, arrhythmia or sudden death.
How it occurs or is acquired
Pedigree-breed risk is supported for several breeds. A negative breed-specific DNA test does not exclude HCM because HCM is genetically heterogeneous.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: American Shorthair, Bengal, Bengal Longhair, Birman, British Shorthair, Chartreux, Cornish Rex, Himalayan, Maine Coon, Maine Coon Polydactyl, Norwegian Forest, Persian, Ragdoll, Scottish Fold, Scottish Fold Longhair, Siberian, Sphynx

Primary reference for this entry: ACVIM consensus statement on classification, diagnosis and management of cardiomyopathies in cats.

Hypokalemic polymyopathy — WNK4-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited renal potassium-wasting disorder that can cause episodic or persistent muscle weakness, ventroflexion of the neck and gait abnormalities.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Australian Mist, Bombay, Burmese, Burmilla, Burmilla Longhair, Singapura

Primary reference for this entry: Governing Council of the Cat Fancy — Gene testing.

LTBP3-related skeletal dysplasia

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited skeletal-development disorder associated with disproportionate growth abnormalities.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: British Longhair, British Shorthair

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Maine Coon HCM — MYBPC3 A31P-associated risk

Evidence status: Validated Maine Coon MYBPC3 A31P susceptibility variant; not diagnostic for HCM

What it is and how it can affect the cat
Breed-associated hypertrophic cardiomyopathy risk variant in MYBPC3.
How it occurs or is acquired
The A31P variant increases HCM risk but has incomplete penetrance; DNA status does not replace echocardiographic screening.
Inheritance and risk
Autosomal dominant susceptibility with incomplete, age-dependent penetrance. Homozygous cats generally have greater risk than heterozygotes, but genotype does not determine an individual outcome. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive A31P result increases HCM risk in Maine Coons but does not diagnose hypertrophy. A negative result does not exclude HCM; echocardiographic screening remains necessary.

Relevant breeds/varieties on this page: Maine Coon, Maine Coon Polydactyl

Primary reference for this entry: UC Davis VGL — Hypertrophic Cardiomyopathy in Maine Coons.

Manx syndrome / spinal dysraphism

Evidence status: Established dominant tailless phenotype with variable spinal-dysraphism risk

What it is and how it can affect the cat
Spectrum of sacrocaudal vertebral and spinal-cord abnormalities associated with the tailless Manx phenotype; severe cases may cause paresis and urinary/fecal incontinence.
How it occurs or is acquired
The tailless phenotype is inherited as a dominant trait with embryonic lethality in homozygotes; clinical severity among surviving heterozygotes is variable.
Inheritance and risk
Autosomal dominant with variable expression; homozygosity is generally considered embryonic lethal. Surviving heterozygotes vary from clinically normal tailless cats to severe spinal disease. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
Genotype or tailless phenotype cannot predict neurologic severity. Clinical neurologic, orthopedic and urinary/fecal assessment is required.

Relevant breeds/varieties on this page: Cymric, Manx

Primary reference for this entry: UFAW — Manx syndrome.

Mucopolysaccharidosis VI — ARSB-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited lysosomal storage disease causing skeletal, ocular and systemic abnormalities; severity depends on the causal variant.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Oriental Longhair, Oriental Shorthair, Peterbald, Siamese

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Munchkin chondrodysplasia — UGDH-related

Evidence status: Established UGDH-associated dominant short-limb phenotype with welfare implications

What it is and how it can affect the cat
Disproportionate dwarfism with shortened limbs and characteristic long-bone changes.
How it occurs or is acquired
A UGDH structural variant is associated with the short-legged Munchkin phenotype; inheritance is dominant with evidence consistent with homozygous lethality.
Inheritance and risk
Autosomal dominant for disproportionate short limbs, with evidence consistent with homozygous lethality. Clinical skeletal effects can vary among surviving heterozygotes. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
One copy predicts the short-legged phenotype and associated skeletal-risk genotype; it does not quantify pain or mobility impairment. Two-copy conceptions may not survive.

Relevant breeds/varieties on this page: Minuet, Minuet Longhair, Munchkin, Munchkin Longhair

Primary reference for this entry: OMIA — UGDH-related chondrodysplasia in Munchkin cats.

Myotonia congenita — CLCN1-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited skeletal-muscle channelopathy causing stiffness and delayed muscle relaxation.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Australian Mist, Bombay, Burmese, Burmilla, Burmilla Longhair, Singapura

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Myotubular myopathy — MTM1-related

Evidence status: Established X-linked inherited disorder with a cited molecular association

What it is and how it can affect the cat
X-linked inherited myopathy causing severe muscle weakness.
How it occurs or is acquired
This is a germline X-chromosome disorder inherited rather than acquired.
Inheritance and risk
X-linked recessive for the cited form; hemizygous males are at greatest risk, while heterozygous females are usually carriers but can vary. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive result must be interpreted by sex and zygosity. A male with the disease-associated allele is at risk; a heterozygous female is generally a carrier. Correlate with clinical findings.

Relevant breeds/varieties on this page: Maine Coon, Maine Coon Polydactyl

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Niemann-Pick disease type C2 — NPC2-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Lysosomal lipid-storage disorder causing progressive neurologic disease.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Oriental Longhair, Oriental Shorthair, Peterbald, Siamese

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

PAX3-related dominant blue eyes / auditory-pigmentary syndrome

Evidence status: PAX3-associated dominant pigmentation trait; auditory risk is allele and lineage dependent

What it is and how it can affect the cat
Lineage-associated pigmentation phenotype that can be accompanied by unilateral or bilateral sensorineural deafness.
How it occurs or is acquired
Multiple PAX3 variants have been reported in domestic cats, including Maine Coon lines; risk depends on the specific variant and lineage.
Inheritance and risk
Autosomal dominant for validated dominant-blue-eye alleles. Deafness penetrance varies with the specific PAX3 variant and lineage. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive result predicts the relevant pigmentation allele, not hearing status. BAER testing is required to determine unilateral or bilateral deafness.

Relevant breeds/varieties on this page: Maine Coon, Maine Coon Polydactyl

Primary reference for this entry: OMIA — PAX3-related auditory-pigmentary syndrome / dominant blue eyes in cats.

Persian-family progressive retinal degeneration — AIPL1-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Early-onset inherited retinal degeneration described in Persian-family cats.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Exotic Shorthair, Himalayan, Persian, Scottish Fold, Scottish Fold Longhair, Selkirk Rex, Selkirk Rex Longhair

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Polycystic kidney disease — PKD1-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Progressive bilateral renal cyst formation that can lead to chronic kidney disease.
How it occurs or is acquired
This is a germline disorder inherited rather than acquired. Age at clinical expression and penetrance may vary.
Inheritance and risk
Autosomal dominant for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
One validated disease-associated copy can confer risk. A positive result should be interpreted with penetrance, age, phenotype and the exact breed/line in which the assay was validated.

Relevant breeds/varieties on this page: American Shorthair, British Longhair, British Shorthair, Exotic Shorthair, Himalayan, Minuet, Minuet Longhair, Minuet Talls, Minuet Talls Longhair, Persian, Ragdoll, Scottish Fold, Scottish Fold Longhair, Scottish Straight, Scottish Straight Longhair, Selkirk Rex, Selkirk Rex Longhair

Primary reference for this entry: UC Davis VGL — Polycystic Kidney Disease (PKD1).

Polycystic kidney disease — PKD2-related

Evidence status: Likely dominant private PKD2 variant; limited population validity

What it is and how it can affect the cat
Inherited cystic kidney disease described in Siberian cats.
How it occurs or is acquired
A breed-associated PKD2 variant is listed in current feline-genetics guidance; interpretation should remain tied to the validated breed/line.
Inheritance and risk
The reported Siberian/Neva Masquerade PKD2 deletion segregated as autosomal dominant in one family and appears uncommon or private; other affected Siberians lacked it. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive result supports cystic-kidney risk for the reported variant. A negative result does not exclude hereditary or acquired renal cysts; renal imaging remains essential.

Relevant breeds/varieties on this page: Siberian

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Polydactyly

Evidence status: Inherited dominant digit-number trait, usually not a disease by itself

What it is and how it can affect the cat
Congenital presence of extra digits, most often on the forepaws.
How it occurs or is acquired
Often inherited as a dominant trait and usually does not cause disease by itself. It is common in some Maine Coon lines.
Inheritance and risk
Often autosomal dominant with variable expression; different regulatory variants and lineages exist. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive trait result may predict extra digits but does not by itself indicate disability. Examine digit alignment, claw growth and mobility rather than treating genotype as disease.

Relevant breeds/varieties on this page: Maine Coon, Maine Coon Polydactyl

Primary reference for this entry: Merck Veterinary Manual — Commonly reported congenital and inherited defects in cats.

Primary congenital/early-onset glaucoma — LTBP2-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited abnormality of aqueous-humor drainage that can cause increased intraocular pressure, pain and vision loss.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Oriental Longhair, Oriental Shorthair, Peterbald, Siamese

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Progressive retinal atrophy — Bengal PRA-b (KIF3B-related)

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited retinal degeneration causing progressive vision loss in Bengal cats.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Bengal, Bengal Longhair

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Progressive retinal atrophy — rdAc (CEP290-related)

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Late-onset progressive retinal degeneration leading to blindness.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Abyssinian, American Curl, American Curl Longhair, American Wirehair, Balinese, Bengal, Bengal Longhair, Cornish Rex, Ocicat, Oriental Longhair, Oriental Shorthair, Peterbald, Savannah, Siamese, Somali, Tonkinese

Primary reference for this entry: UC Davis VGL — Progressive Retinal Atrophy (PRA rdAc / CEP290).

Progressive retinal atrophy — Rdy / CRX-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Early-onset inherited retinal degeneration reported in Abyssinian-family cats.
How it occurs or is acquired
This is a germline disorder inherited rather than acquired. Age at clinical expression and penetrance may vary.
Inheritance and risk
Autosomal dominant for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
One validated disease-associated copy can confer risk. A positive result should be interpreted with penetrance, age, phenotype and the exact breed/line in which the assay was validated.

Relevant breeds/varieties on this page: Abyssinian, Somali

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Pyruvate kinase deficiency — PKLR-related

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited erythrocyte enzyme deficiency that can cause intermittent or chronic hemolytic anemia.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Abyssinian, Bengal, Bengal Longhair, Oriental Longhair, Oriental Shorthair, Peterbald, Siamese, Somali

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Ragdoll HCM — MYBPC3 R820W-associated risk

Evidence status: Validated Ragdoll MYBPC3 R820W susceptibility variant; not diagnostic for HCM

What it is and how it can affect the cat
Breed-associated hypertrophic cardiomyopathy risk variant in MYBPC3.
How it occurs or is acquired
The R820W variant is associated with HCM risk in Ragdolls; homozygous cats are at particularly high risk. DNA status does not exclude other causes of HCM.
Inheritance and risk
Autosomal dominant susceptibility with incomplete, age-dependent penetrance; homozygotes have particularly high risk, while heterozygotes remain variably affected. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
A positive R820W result increases HCM risk in Ragdolls but does not diagnose hypertrophy. A negative result does not exclude HCM; echocardiographic screening remains necessary.

Relevant breeds/varieties on this page: American Bobtail, American Bobtail Shorthair, Highlander, Highlander Shorthair, Ragdoll

Primary reference for this entry: UC Davis VGL — Hypertrophic Cardiomyopathy in Ragdolls.

Scottish Fold osteochondrodysplasia — TRPV4-related

Evidence status: Established TRPV4 fold/osteochondrodysplasia variant with direct welfare significance

What it is and how it can affect the cat
Developmental cartilage and bone disorder responsible for the folded-ear phenotype and associated with limb/tail deformity and progressive osteoarthritis.
How it occurs or is acquired
The TRPV4 fold variant is autosomal dominant. Folded-ear cats carry the disease-associated variant; homozygous cats tend to be more severely affected.
Inheritance and risk
Autosomal dominant with a dosage effect. Folded-ear cats carry at least one associated allele; homozygotes generally develop earlier and more severe skeletal disease. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
One copy identifies a fold-associated osteochondrodysplasia genotype; two copies predict substantially greater risk. Genotype does not measure current pain, deformity or mobility loss.

Relevant breeds/varieties on this page: Scottish Fold, Scottish Fold Longhair

Primary reference for this entry: UC Davis VGL — Scottish Fold TRPV4 test and osteochondrodysplasia.

Spinal muscular atrophy — LIX1/LNPEP-region associated

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited motor-neuron disease causing weakness, muscle atrophy and gait abnormalities in young Maine Coon cats.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Maine Coon, Maine Coon Polydactyl

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Thoracolumbar intervertebral disc disease

Evidence status: Clinical, developmental, conformational or epidemiologic association—not a single diagnostic variant

What it is and how it can affect the cat
Degenerative intervertebral disc disease causing spinal pain and/or neurologic dysfunction.
How it occurs or is acquired
A referral-population study found Persian and British Shorthair cats significantly overrepresented; this is an epidemiologic association rather than a single-gene disorder.
Inheritance and risk
No single universally predictive inheritance model is established for this glossary entry. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
No general positive-DNA-test meaning should be inferred. Use the disorder-appropriate clinical screening, imaging, laboratory testing or phenotypic examination.

Relevant breeds/varieties on this page: British Shorthair, Persian

Primary reference for this entry: Prevalence and breed predisposition for thoracolumbar intervertebral disc disease in cats.

TPO-related inherited hypothyroidism

Evidence status: Established breed/line-associated inherited disorder with a cited molecular test

What it is and how it can affect the cat
Inherited thyroid hormone synthesis disorder that can cause poor growth, lethargy and developmental abnormalities.
How it occurs or is acquired
This is a germline, usually loss-of-function disorder; it is inherited rather than acquired. Clinical onset and severity remain disorder-specific.
Inheritance and risk
Autosomal recessive for the cited breed-associated form. A breed association does not mean every cat of that breed will develop the condition.
What a positive genetic test means
For the validated variant, one copy generally identifies a carrier and two copies identify an at-risk genotype. Confirm the exact variant and breed validation before clinical or breeding use.

Relevant breeds/varieties on this page: Russian Blue

Primary reference for this entry: Lyons LA. Genetic Testing: practical dos and don'ts for cats. J Feline Med Surg. 2024.

Principal evidence sources